Papers 2004

Cserzo M, Eisenhaber F, Eisenhaber B, and Simon I. TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter. Bioinformatics 20(1):136-137, 2004

Eisenhaber B, Eisenhaber F, Maurer-Stroh S, and Neuberger G. Prediction of sequence signals for lipid post-translational modifications: insights from case studies. Proteomics 4(6):1614-1625, 2004

Eisenhaber B, Schneider G, Wildpaner M, and Eisenhaber F. A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans, Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe. J Mol Biol 337(2):243-253, 2004

Hackl H, Maurer M, Mlecnik B, Hartler J, Stocker G, Miranda-Saavedra D, and Trajanoski Z. GOLD.db: genomics of lipid-associated disorders database. BMC Genomics 5(1):93, 2004

Hackl H, Sanchez-Cabo F, Sturn A, Wolkenhauer O, and Trajanoski Z. Analysis of DNA microarray data. Curr Top Med Chem 4(13):1357-1370, 2004

Hofacker IL, Bernhart SH, and Stadler PF. Alignment of RNA base pairing probability matrices. Bioinformatics 20(14):2222-2227, 2004

Kurzbauer R, Teis D, de Araujo ME, Maurer-Stroh S, Eisenhaber F, Bourenkov GP, Bartunik HD, Hekman M, Rapp UR, Huber LA, and Clausen T. Crystal structure of the p14/MP1 scaffolding complex: how a twin couple attaches mitogen-activated protein kinase signaling to late endosomes. Proc Natl Acad Sci USA 101(30):10984-10989, 2004

Maurer-Stroh S and Eisenhaber F. Myristoylation of viral and bacterial proteins. Trends Microbiol 12(4):178-185, 2004

Maurer-Stroh S, Gouda M, Novatchkova M, Schleiffer A, Schneider G, Sirota FL, Wildpaner M, Hayashi N, and Eisenhaber F. MYRbase: analysis of genome-wide glycine myristoylation enlarges the functional spectrum of eukaryotic myristoylated proteins. Genome Biol 5(3):R21, 2004

Müller WG, Rieder D, Kreth G, Cremer C, Trajanoski Z, and McNally JG. Generic features of tertiary chromatin structure as detected in natural chromosomes. Mol Cell Biol 24(21):9359-9370, 2004

Neuberger G, Kunze M, Eisenhaber F, Berger J, Hartig A, and Brocard C. Hidden localization motifs: naturally occurring peroxisomal targeting signals in non-peroxisomal proteins. Genome Biol 5(12):R97, 2004

Novatchkova M, Budhiraja R, Coupland G, Eisenhaber F, and Bachmair A. SUMO conjugation in plants. Planta 220(1):1-8, 2004

Pieler R, Sanchez-Cabo F, Hackl H, Thallinger GG, and Trajanoski Z. ArrayNorm: comprehensive normalization and analysis of microarray data. Bioinformatics 20(12):1971-1973, 2004

Rabitsch KP, Gregan J, Schleiffer A, Javerzat JP, Eisenhaber F, and Nasmyth K. Two fission yeast homologs of Drosophila Mei-S332 are required for chromosome segregation during meiosis I and II. Curr Biol 14(4):287-301, 2004

Schmidt S, Rainer J, Ploner C, Presul E, Riml S, and Kofler R. Glucocorticoid-induced apoptosis and glucocorticoid resistance: molecular mechanisms and clinical relevance. Cell Death Differ 11 Suppl 1:S45-S55, 2004

Silverman J, Takai H, Buonomo SB, Eisenhaber F, and de Lange T. Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint. Genes Dev 18(17):2108-2119, 2004

Stocker G, Rieder D, and Trajanoski Z. ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster. Bioinformatics 20(5):805-807, 2004

Thurner C, Hofacker IL, and Stadler PF. Conserved RNA Pseudoknots. Proc.German Conf.on Bioinformatics (GCB '04): 207-216, 2004

Washietl S and Hofacker IL. Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics. J Mol Biol 342(1):19-30, 2004

Wolfinger MT, Svrcek-Seiler WA, Flamm C, Hofacker IL, and Stadler PF. Efficient computation of RNA folding dynamics. J Phys A: Math Gen 37(17):4731-4741, 2004

Zimmermann R, Strauss JG, Haemmerle G, Schoiswohl G, Birner-Gruenberger R, Riederer M, Lass A, Neuberger G, Eisenhaber F, Hermetter A, and Zechner R. Fat mobilization in adipose tissue is promoted by adipose triglyceride lipase. Science 306(5700):1383-1386, 2004